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Jana crashing and missing Update?
Neumann, Erik | Wed, Jan 28, 2026
(updated Wed, Jan 28, 2026)
Hello Jana-Developer Team, i run the Version 2.1 and i have problems with Jana crashing, when i want to open Vesta. When i check for Updates it says, that there is already Version 2.2. On the Website though i cannot see this version.
Michal Dušek Wed, Jan 28, 2026
Hello,
This was a bug in the web page, which has been removed today. The version is 2.2.
Best wishes,
Michal
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TOverall is set to 0 after last refinement cycle
Klar, Paul Benjamin | Tue, Dec 2, 2025
(updated Wed, Dec 3, 2025)
I can refine TOverall (with fixed all *) and during the refinement the behaviour is as expected. The M40 file is properly updated after each cycle and also the .ref file indicates that TOverall was refined. However, after the last refinement cycle, TOverall is set to 0.0 in the M40 file.
There is an easy workaround: Refine TOverall, get final value from *.ref file, set the Uiso of all atoms to that value.
VersionL: Jana2020 2.1, 29/08/2025
Kind regards,
Paul
Vaclav Petricek Wed, Dec 3, 2025
The reason for introducing the isotropic overall factor was to allow for joint refinement (X-ray + neutron) to correct the harmonic ADPs of one of the datasets. Then, this factor can be used for only one data set. Such a correction is far from ideal, but for most cases, it can help in solving specific problems, such as localizing hydrogen atoms in structures containing heavy atoms. However, some users realized that if they set this factor to some negative value and fix it, the problem with non-positive harmonic ADPs will be “solved”. For this reason, I recalculated this factor for individual atoms when using a single data set. However, I did not expect that this factor would be used in combination with the fixed command. Then it causes problems, as this does not allow recalculation of the fixed Uiso values. BTW, there is a more natural way to keep ADPs identical for a group or all atoms by using the “restrict” commands. It has existed in Jana programs from the very beginning and is described in the Jana98 manual.
I think that the best approach would be to modify the program so that the overall isotropic ADP is not transformed into individual ADPs after refinement, but rather temporarily only when we test them for positivity and during preparation of the CIF output. I hope to make changes soon.
Best regards,
Vaclav
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My question disappeared
Michal Dušek | Wed, Oct 22, 2025
If you believe your question has disappeared from this forum, please let us know. It occurred in several cases due to changes made to this web page.
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Download link is broken?
Hunter Kantelis | Wed, Oct 1, 2025
(updated Tue, Oct 21, 2025)
Hello Jana team,
When I attempt to download the 2020 version I am met with a 404 not found error.
Kind regards,
Hunter
Naveen Kumar Chogondahalli Muniraju Wed, Oct 1, 2025
Instead of left-clicking on the download link, right-click on the link and 'save link as' to save the 'Jana2020Inst.msi'.
Best
Naveen
Michal Dušek Thu, Oct 2, 2025
Hello Hunter,
I was not able to replicate the issue you reported. When I click, I receive a security warning, and then I can download the file without any problems. We were fixing some issues yesterday, so it is possible you encountered a glitch during that time. Please let me know if the problem persists.
Best wishes,
Michal
Robert Buecker Tue, Oct 21, 2025
Hi, I can confirm that I cannot download 2.1 - I get a cryptic red "The version field is required" error, though I do not see a "version field" anywhere.
Best wishes,
Robert
Michal Dušek Tue, Oct 21, 2025
Hi Robert, thank you for the bug report, it is now corrected.
Best wishes,
Michal